IL_9I5V_053
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 9I5V|1|A|A|1948, 9I5V|1|A|U|1954, 9I5V|1|A|U|1973
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_053 not in the Motif Atlas
- Geometric match to IL_8B0X_138
- Geometric discrepancy: 0.0564
- The information below is about IL_8B0X_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.3
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
9I5V|1|A|C|1944
9I5V|1|A|G|1945
9I5V|1|A|A|1946
9I5V|1|A|A|1947
9I5V|1|A|A|1948
9I5V|1|A|5MU|1949
9I5V|1|A|U|1950
9I5V|1|A|C|1951
9I5V|1|A|C|1952
9I5V|1|A|U|1953
9I5V|1|A|U|1954
9I5V|1|A|G|1955
*
9I5V|1|A|C|1971
9I5V|1|A|5MC|1972
9I5V|1|A|U|1973
9I5V|1|A|G|1974
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 10
- AURKAIP1/COX24 domain-containing protein
- Chain D
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: