IL_9I5V_073
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGCG*CAAGAUAAG
- Length
- 14 nucleotides
- Bulged bases
- 9I5V|1|A|A|2781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_073 not in the Motif Atlas
- Geometric match to IL_4WF9_099
- Geometric discrepancy: 0.0941
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|A|U|2637
9I5V|1|A|U|2638
9I5V|1|A|G|2639
9I5V|1|A|C|2640
9I5V|1|A|G|2641
*
9I5V|1|A|C|2775
9I5V|1|A|A|2776
9I5V|1|A|A|2777
9I5V|1|A|G|2778
9I5V|1|A|A|2779
9I5V|1|A|U|2780
9I5V|1|A|A|2781
9I5V|1|A|A|2782
9I5V|1|A|G|2783
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain M
- Large ribosomal subunit protein uL13
Coloring options: