IL_9I5V_084

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCU*AGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_084 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.3869

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9I5V|1|B|C|28
9I5V|1|B|C|29
9I5V|1|B|U|30
*
9I5V|1|B|A|48
9I5V|1|B|G|49
9I5V|1|B|A|50
9I5V|1|B|A|51
9I5V|1|B|G|52

Current chains

Chain B

5S rRNA

Nearby chains

Chain 11

Large ribosomal subunit protein uL5

Chain R

Large ribosomal subunit protein uL18