IL_9I5V_086
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_086 not in the Motif Atlas
- Geometric match to IL_8B0X_175
- Geometric discrepancy: 0.0522
- The information below is about IL_8B0X_175
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9I5V|1|B|C|69
9I5V|1|B|G|70
9I5V|1|B|A|71
9I5V|1|B|U|72
9I5V|1|B|G|73
9I5V|1|B|G|74
9I5V|1|B|U|75
9I5V|1|B|A|76
9I5V|1|B|C|77
*
9I5V|1|B|G|90
9I5V|1|B|G|91
9I5V|1|B|A|92
9I5V|1|B|G|93
9I5V|1|B|A|94
9I5V|1|B|G|95
9I5V|1|B|U|96
9I5V|1|B|A|97
9I5V|1|B|G|98
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- Large ribosomal subunit protein uL16
- Chain Y
- Large ribosomal subunit protein bL25
Coloring options: