IL_9I5V_092

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGC*GCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_092 not in the Motif Atlas

Geometric match to IL_2O3V_002

Geometric discrepancy: 0.3866

The information below is about IL_2O3V_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_60988.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

9I5V|1|a|G|67
9I5V|1|a|G|68
9I5V|1|a|G|69
9I5V|1|a|C|70
*
9I5V|1|a|G|100
9I5V|1|a|C|101
9I5V|1|a|G|102
9I5V|1|a|A|103
9I5V|1|a|C|104

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein bS20