IL_9I5V_093

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAC*GG

Length

6 nucleotides

Bulged bases

9I5V|1|a|A|132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_093 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2218

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_16407.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9I5V|1|a|C|131
9I5V|1|a|A|132
9I5V|1|a|A|133
9I5V|1|a|C|134
*
9I5V|1|a|G|236
9I5V|1|a|G|237

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

Small ribosomal subunit protein bS16

Chain d

Small ribosomal subunit protein bS20

Chain e

Small ribosomal subunit protein uS17