IL_9I5V_094

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGCC*GAUA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_094 not in the Motif Atlas

Geometric match to IL_8B0X_010

Geometric discrepancy: 0.0974

The information below is about IL_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

9I5V|1|a|U|135
9I5V|1|a|U|136
9I5V|1|a|G|137
9I5V|1|a|C|138
9I5V|1|a|C|139
*
9I5V|1|a|G|232
9I5V|1|a|A|233
9I5V|1|a|U|234
9I5V|1|a|A|235

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

Small ribosomal subunit protein bS16

Chain d

Small ribosomal subunit protein bS20