IL_9I5V_098

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUUAG*CGACGAUG

Length

14 nucleotides

Bulged bases

9I5V|1|a|U|249, 9I5V|1|a|C|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_098 not in the Motif Atlas

Geometric match to IL_4LFB_011

Geometric discrepancy: 0.1064

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.6

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

7

Unit IDs

9I5V|1|a|C|247
9I5V|1|a|A|248
9I5V|1|a|U|249
9I5V|1|a|U|250
9I5V|1|a|A|251
9I5V|1|a|G|252
*
9I5V|1|a|C|282
9I5V|1|a|G|283
9I5V|1|a|A|284
9I5V|1|a|C|285
9I5V|1|a|G|286
9I5V|1|a|A|287
9I5V|1|a|U|288
9I5V|1|a|G|289

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

Small ribosomal subunit protein uS17

Chain j

Small ribosomal subunit protein uS12