IL_9I5V_115
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_115 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.1254
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.5
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
9I5V|1|a|G|673
9I5V|1|a|G|674
9I5V|1|a|A|675
9I5V|1|a|A|676
9I5V|1|a|U|677
*
9I5V|1|a|G|713
9I5V|1|a|G|714
9I5V|1|a|A|715
9I5V|1|a|A|716
9I5V|1|a|C|717
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain 9
- Small ribosomal subunit protein bS21
- Chain D
- Large ribosomal subunit protein uL2
- Chain I
- Small ribosomal subunit protein bS18
- Chain L
- Small ribosomal subunit protein uS11
- Chain b
- Small ribosomal subunit protein bS6
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