IL_9I5V_119
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5V_119 not in the Motif Atlas
- Geometric match to IL_4LFB_034
- Geometric discrepancy: 0.0861
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|a|G|886
9I5V|1|a|G|887
9I5V|1|a|A|888
9I5V|1|a|G|889
9I5V|1|a|U|890
9I5V|1|a|A|891
9I5V|1|a|C|892
9I5V|1|a|G|893
*
9I5V|1|a|U|904
9I5V|1|a|G|905
9I5V|1|a|A|906
9I5V|1|a|A|907
9I5V|1|a|A|908
9I5V|1|a|C|909
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain 10
- AURKAIP1/COX24 domain-containing protein
- Chain j
- Small ribosomal subunit protein uS12
Coloring options: