IL_9I5V_125

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

9I5V|1|a|C|1198, 9I5V|1|a|A|1199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_125 not in the Motif Atlas

Geometric match to IL_4LFB_045

Geometric discrepancy: 0.0986

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9I5V|1|a|G|1054
9I5V|1|a|G|1055
*
9I5V|1|a|U|1197
9I5V|1|a|C|1198
9I5V|1|a|A|1199
9I5V|1|a|G|1200
9I5V|1|a|C|1201

Current chains

Chain a

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein uS14

Chain k

Small ribosomal subunit protein uS3