IL_9I5V_131

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_131 not in the Motif Atlas

Geometric match to IL_8B0X_056

Geometric discrepancy: 0.1108

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28265.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9I5V|1|a|C|1300
9I5V|1|a|G|1301
9I5V|1|a|G|1302
9I5V|1|a|A|1303
9I5V|1|a|U|1304
9I5V|1|a|C|1305
*
9I5V|1|a|G|1326
9I5V|1|a|U|1327
9I5V|1|a|G|1328
9I5V|1|a|A|1329
9I5V|1|a|A|1330
9I5V|1|a|G|1331

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS13