IL_9I5V_133

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I5V_133 not in the Motif Atlas

Geometric match to IL_8GLP_275

Geometric discrepancy: 0.0851

The information below is about IL_8GLP_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9I5V|1|a|G|1399
9I5V|1|a|4OC|1400
9I5V|1|a|C|1401
9I5V|1|a|5MC|1402
*
9I5V|1|a|G|1486
9I5V|1|a|UR3|1487
9I5V|1|a|A|1488
9I5V|1|a|A|1489
9I5V|1|a|C|1490

Current chains

Chain a

16S rRNA

Nearby chains

Chain 10

AURKAIP1/COX24 domain-containing protein

Chain 14

Ribosome-associated translation inhibitor RaiA