IL_9I78_143

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUCCC*GCUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I78_143 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.1465

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

9I78|1|L3|A|32
9I78|1|L3|U|33
9I78|1|L3|C|34
9I78|1|L3|C|35
9I78|1|L3|C|36
*
9I78|1|L3|G|41
9I78|1|L3|C|42
9I78|1|L3|U|43
9I78|1|L3|C|44
9I78|1|L3|U|45

Current chains

Chain L3

5S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LJ

Putative ribosomal protein