IL_9I78_144
3D structure
- PDB id
- 9I78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUUAGUAC*GGAAUCC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I78_144 not in the Motif Atlas
- Geometric match to IL_8QYX_169
- Geometric discrepancy: 0.047
- The information below is about IL_8QYX_169
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9I78|1|L3|G|72
9I78|1|L3|U|73
9I78|1|L3|U|74
9I78|1|L3|A|75
9I78|1|L3|G|76
9I78|1|L3|U|77
9I78|1|L3|A|78
9I78|1|L3|C|79
*
9I78|1|L3|G|99
9I78|1|L3|G|100
9I78|1|L3|A|101
9I78|1|L3|A|102
9I78|1|L3|U|103
9I78|1|L3|C|104
9I78|1|L3|C|105
Current chains
- Chain L3
- 5S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LS
- 60S ribosomal protein L20
- Chain LT
- 60S ribosomal protein l21-like protein
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