IL_9I88_005
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GGGAG*CUUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 9I88|1|A|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_005 not in the Motif Atlas
- Geometric match to IL_4WF9_004
- Geometric discrepancy: 0.1099
- The information below is about IL_4WF9_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9I88|1|A|G|81
9I88|1|A|G|82
9I88|1|A|G|83
9I88|1|A|A|84
9I88|1|A|G|85
*
9I88|1|A|C|97
9I88|1|A|U|98
9I88|1|A|U|99
9I88|1|A|U|100
9I88|1|A|G|101
9I88|1|A|A|102
9I88|1|A|U|103
9I88|1|A|C|104
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein uL29
- Chain X
- Large ribosomal subunit protein uL24
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