IL_9I88_009
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CUUAGUAG*CGAAAUG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_009 not in the Motif Atlas
- Homologous match to IL_7A0S_007
- Geometric discrepancy: 0.1151
- The information below is about IL_7A0S_007
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9I88|1|A|C|241
9I88|1|A|U|242
9I88|1|A|U|243
9I88|1|A|A|244
9I88|1|A|G|245
9I88|1|A|U|246
9I88|1|A|A|247
9I88|1|A|G|248
*
9I88|1|A|C|256
9I88|1|A|G|257
9I88|1|A|A|258
9I88|1|A|A|259
9I88|1|A|A|260
9I88|1|A|U|261
9I88|1|A|G|262
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL35
- Chain O
- Large ribosomal subunit protein uL15
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