IL_9I88_015

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_015 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.0958

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9I88|1|A|A|581
9I88|1|A|G|582
9I88|1|A|A|583
9I88|1|A|G|584
*
9I88|1|A|U|597
9I88|1|A|G|598
9I88|1|A|A|599
9I88|1|A|U|600

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL13

Chain T

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein bL21