IL_9I88_036

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

9I88|1|A|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_036 not in the Motif Atlas

Homologous match to IL_7A0S_035

Geometric discrepancy: 0.3084

The information below is about IL_7A0S_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9I88|1|A|A|1055
9I88|1|A|U|1056
9I88|1|A|A|1057
*
9I88|1|A|U|1193
9I88|1|A|U|1194

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL13

Chain T

Large ribosomal subunit protein bL20