IL_9I88_042

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

9I88|1|A|U|1105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_042 not in the Motif Atlas

Homologous match to IL_1MMS_003

Geometric discrepancy: 0.4318

The information below is about IL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9I88|1|A|G|1103
9I88|1|A|U|1104
9I88|1|A|U|1105
9I88|1|A|G|1106
*
9I88|1|A|C|1120
9I88|1|A|A|1121
9I88|1|A|U|1122
9I88|1|A|C|1123

Current chains

Chain A

23S ribosomal RNA

Nearby chains