IL_9I88_052

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_052 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2045

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9I88|1|A|U|1394
9I88|1|A|G|1395
9I88|1|A|A|1396
9I88|1|A|G|1397
9I88|1|A|G|1398
*
9I88|1|A|C|1407
9I88|1|A|G|1408
9I88|1|A|U|1409
9I88|1|A|A|1410
9I88|1|A|G|1411

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL28

Chain 7

Large ribosomal subunit protein bL34

Chain G

Large ribosomal subunit protein uL2