IL_9I88_053

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UAAU*AAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_053 not in the Motif Atlas

Geometric match to IL_9H3G_238

Geometric discrepancy: 0.2799

The information below is about IL_9H3G_238

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9I88|1|A|U|1448
9I88|1|A|A|1449
9I88|1|A|A|1450
9I88|1|A|U|1451
*
9I88|1|A|A|1632
9I88|1|A|A|1633
9I88|1|A|A|1634
9I88|1|A|A|1635

Current chains

Chain A

23S ribosomal RNA

Nearby chains