IL_9I88_057

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

9I88|1|A|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_057 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.2859

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9I88|1|A|A|1481
9I88|1|A|U|1482
9I88|1|A|A|1483
9I88|1|A|G|1484
*
9I88|1|A|U|1598
9I88|1|A|G|1599
9I88|1|A|A|1600
9I88|1|A|U|1601
9I88|1|A|U|1602

Current chains

Chain A

23S ribosomal RNA

Nearby chains