IL_9I88_072

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9I88|1|A|A|1926, 9I88|1|A|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_072 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.21

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9I88|1|A|U|1868
9I88|1|A|G|1869
*
9I88|1|A|U|1925
9I88|1|A|A|1926
9I88|1|A|A|1927
9I88|1|A|A|1928

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA