IL_9I88_075

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_075 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.2085

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9I88|1|A|A|1883
9I88|1|A|G|1884
9I88|1|A|G|1885
9I88|1|A|A|1886
9I88|1|A|G|1887
*
9I88|1|A|C|1909
9I88|1|A|G|1910
9I88|1|A|A|1911
9I88|1|A|A|1912
9I88|1|A|U|1913

Current chains

Chain A

23S ribosomal RNA

Nearby chains