IL_9I88_080

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9I88|1|A|C|2082, 9I88|1|A|U|2640, 9I88|1|A|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_080 not in the Motif Atlas

Geometric match to IL_8B0X_140

Geometric discrepancy: 0.0664

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

9I88|1|A|A|2081
9I88|1|A|C|2082
9I88|1|A|G|2083
*
9I88|1|A|C|2639
9I88|1|A|U|2640
9I88|1|A|A|2641
9I88|1|A|U|2642

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL32

Chain H

Large ribosomal subunit protein uL3

Chain V

Large ribosomal subunit protein uL22