IL_9I88_088

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

9I88|1|A|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_088 not in the Motif Atlas

Geometric match to IL_8B0X_149

Geometric discrepancy: 0.1341

The information below is about IL_8B0X_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9I88|1|A|U|2428
9I88|1|A|U|2429
9I88|1|A|C|2430
*
9I88|1|A|G|2441
9I88|1|A|G|2442

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL33A

Chain O

Large ribosomal subunit protein uL15