IL_9I88_093

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_093 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1319

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9I88|1|A|C|2493
9I88|1|A|C|2494
9I88|1|A|A|2495
9I88|1|A|A|2496
9I88|1|A|G|2497
*
9I88|1|A|C|2507
9I88|1|A|G|2508
9I88|1|A|A|2509
9I88|1|A|C|2510
9I88|1|A|G|2511

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL36

Chain P

Large ribosomal subunit protein uL16