IL_9I88_123
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CAUUAG*CAACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 9I88|1|a|U|252, 9I88|1|a|C|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_123 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.1567
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9I88|1|a|C|250
9I88|1|a|A|251
9I88|1|a|U|252
9I88|1|a|U|253
9I88|1|a|A|254
9I88|1|a|G|255
*
9I88|1|a|C|285
9I88|1|a|A|286
9I88|1|a|A|287
9I88|1|a|C|288
9I88|1|a|G|289
9I88|1|a|A|290
9I88|1|a|U|291
9I88|1|a|G|292
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS12
- Chain r
- Small ribosomal subunit protein uS17
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