IL_9I88_130
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GGAAG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_130 not in the Motif Atlas
- Homologous match to IL_6CZR_130
- Geometric discrepancy: 0.2298
- The information below is about IL_6CZR_130
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.3
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9I88|1|a|G|454
9I88|1|a|G|455
9I88|1|a|A|456
9I88|1|a|A|457
9I88|1|a|G|458
*
9I88|1|a|C|491
9I88|1|a|G|492
9I88|1|a|G|493
9I88|1|a|U|494
9I88|1|a|A|495
9I88|1|a|C|496
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain e
- Small ribosomal subunit protein uS4
- Chain q
- Small ribosomal subunit protein bS16
Coloring options: