IL_9I88_133
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9I88|1|a|A|540, 9I88|1|a|U|542, 9I88|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_133 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.3023
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9I88|1|a|G|523
9I88|1|a|U|524
9I88|1|a|G|525
9I88|1|a|C|526
9I88|1|a|C|527
9I88|1|a|A|528
9I88|1|a|G|529
*
9I88|1|a|C|536
9I88|1|a|G|537
9I88|1|a|G|538
9I88|1|a|U|539
9I88|1|a|A|540
9I88|1|a|A|541
9I88|1|a|U|542
9I88|1|a|A|543
9I88|1|a|C|544
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS3
- Chain e
- Small ribosomal subunit protein uS4
- Chain m
- Small ribosomal subunit protein uS12
Coloring options: