IL_9I88_134

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9I88|1|a|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_134 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1109

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9I88|1|a|C|577
9I88|1|a|G|578
9I88|1|a|U|579
9I88|1|a|A|580
9I88|1|a|A|581
9I88|1|a|A|582
9I88|1|a|G|583
*
9I88|1|a|C|890
9I88|1|a|G|891

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain f

Small ribosomal subunit protein uS5

Chain m

Small ribosomal subunit protein uS12

Chain r

Small ribosomal subunit protein uS17