IL_9I88_147
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I88_147 not in the Motif Atlas
- Homologous match to IL_6CZR_364
- Geometric discrepancy: 0.1066
- The information below is about IL_6CZR_364
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9I88|1|a|G|897
9I88|1|a|G|898
9I88|1|a|A|899
9I88|1|a|G|900
9I88|1|a|U|901
9I88|1|a|A|902
9I88|1|a|C|903
9I88|1|a|G|904
*
9I88|1|a|U|915
9I88|1|a|G|916
9I88|1|a|A|917
9I88|1|a|A|918
9I88|1|a|A|919
9I88|1|a|C|920
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS12
Coloring options: