IL_9I88_156

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9I88|1|a|C|1211, 9I88|1|a|A|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I88_156 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.1933

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9I88|1|a|G|1069
9I88|1|a|G|1070
*
9I88|1|a|U|1210
9I88|1|a|C|1211
9I88|1|a|A|1212
9I88|1|a|U|1213
9I88|1|a|C|1214

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS3

Chain k

Small ribosomal subunit protein uS10

Chain o

Small ribosomal subunit protein uS14B