IL_9I89_162

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAUC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_162 not in the Motif Atlas

Geometric match to IL_3MXH_005

Geometric discrepancy: 0.3213

The information below is about IL_3MXH_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9I89|1|a|C|1141
9I89|1|a|A|1142
9I89|1|a|U|1143
9I89|1|a|C|1144
*
9I89|1|a|G|1153
9I89|1|a|G|1154

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain j

Small ribosomal subunit protein uS9

Chain k

Small ribosomal subunit protein uS10