IL_9I89_165
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- GCAG*CAAAUC
- Length
- 10 nucleotides
- Bulged bases
- 9I89|1|a|A|1268, 9I89|1|a|A|1291, 9I89|1|a|U|1292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I89_165 not in the Motif Atlas
- Homologous match to IL_6CZR_161
- Geometric discrepancy: 0.3091
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9I89|1|a|G|1266
9I89|1|a|C|1267
9I89|1|a|A|1268
9I89|1|a|G|1269
*
9I89|1|a|C|1288
9I89|1|a|A|1289
9I89|1|a|A|1290
9I89|1|a|A|1291
9I89|1|a|U|1292
9I89|1|a|C|1293
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS3
- Chain k
- Small ribosomal subunit protein uS10
- Chain o
- Small ribosomal subunit protein uS14B
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