IL_9I89_175
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I89_175 not in the Motif Atlas
- Geometric match to IL_8B0X_062
- Geometric discrepancy: 0.1962
- The information below is about IL_8B0X_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.3
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
9I89|1|a|C|1441
9I89|1|a|C|1442
9I89|1|a|G|1443
9I89|1|a|A|1444
9I89|1|a|A|1445
9I89|1|a|G|1446
*
9I89|1|a|C|1478
9I89|1|a|G|1479
9I89|1|a|A|1480
9I89|1|a|A|1481
9I89|1|a|G|1482
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- Large ribosomal subunit protein uL14
- Chain S
- Large ribosomal subunit protein bL19
- Chain u
- Small ribosomal subunit protein bS20
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