IL_9IOT_032

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

9IOT|1|A|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_032 not in the Motif Atlas

Geometric match to IL_5J7L_276

Geometric discrepancy: 0.1029

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9IOT|1|A|C|994
9IOT|1|A|C|995
9IOT|1|A|A|996
*
9IOT|1|A|U|1159
9IOT|1|A|G|1160

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL30

Chain L

50S ribosomal protein L13

Chain S

Large ribosomal subunit protein bL20

Chain T

50S ribosomal protein L21