IL_9IOT_036

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9IOT|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_036 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0704

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9IOT|1|A|U|1018
9IOT|1|A|U|1019
9IOT|1|A|A|1020
9IOT|1|A|A|1021
9IOT|1|A|G|1022
9IOT|1|A|U|1023
9IOT|1|A|G|1024
*
9IOT|1|A|C|1140
9IOT|1|A|U|1141
9IOT|1|A|A|1142
9IOT|1|A|A|1143
9IOT|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain L

50S ribosomal protein L13