IL_9IOT_067

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9IOT|1|A|A|1801, 9IOT|1|A|C|1816, 9IOT|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_067 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0502

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9IOT|1|A|U|1798
9IOT|1|A|G|1799
9IOT|1|A|C|1800
9IOT|1|A|A|1801
9IOT|1|A|A|1802
9IOT|1|A|A|1803
9IOT|1|A|C|1804
*
9IOT|1|A|G|1813
9IOT|1|A|G|1814
9IOT|1|A|A|1815
9IOT|1|A|C|1816
9IOT|1|A|G|1817
9IOT|1|A|U|1818
9IOT|1|A|A|1819
9IOT|1|A|U|1820
9IOT|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA