3D structure

PDB id
9IOT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUGAG*CGAGAUGAG
Length
14 nucleotides
Bulged bases
9IOT|1|A|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9IOT_095 not in the Motif Atlas
Geometric match to IL_5J7L_345
Geometric discrepancy: 0.0775
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

9IOT|1|A|C|2636
9IOT|1|A|U|2637
9IOT|1|A|G|2638
9IOT|1|A|A|2639
9IOT|1|A|G|2640
*
9IOT|1|A|C|2774
9IOT|1|A|G|2775
9IOT|1|A|A|2776
9IOT|1|A|G|2777
9IOT|1|A|A|2778
9IOT|1|A|U|2779
9IOT|1|A|G|2780
9IOT|1|A|A|2781
9IOT|1|A|G|2782

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L3
Chain L
50S ribosomal protein L13

Coloring options:


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