IL_9IOT_138
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 9IOT|1|a|U|632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_138 not in the Motif Atlas
- Geometric match to IL_5J7L_030
- Geometric discrepancy: 0.0807
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9IOT|1|a|U|605
9IOT|1|a|G|606
9IOT|1|a|A|607
9IOT|1|a|A|608
9IOT|1|a|A|609
9IOT|1|a|U|610
9IOT|1|a|C|611
9IOT|1|a|C|612
*
9IOT|1|a|G|628
9IOT|1|a|A|629
9IOT|1|a|A|630
9IOT|1|a|C|631
9IOT|1|a|U|632
9IOT|1|a|G|633
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
- Chain h
- Small ribosomal subunit protein uS8
- Chain p
- Small ribosomal subunit protein bS16
- Chain q
- Small ribosomal subunit protein uS17
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