IL_9IOT_143

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9IOT|1|a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_143 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.0789

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9IOT|1|a|U|684
9IOT|1|a|G|685
9IOT|1|a|U|686
9IOT|1|a|A|687
9IOT|1|a|G|688
*
9IOT|1|a|C|699
9IOT|1|a|G|700
9IOT|1|a|U|701
9IOT|1|a|A|702
9IOT|1|a|G|703
9IOT|1|a|A|704
9IOT|1|a|G|705
9IOT|1|a|A|706

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

Small ribosomal subunit protein uS11