IL_9IOT_163
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 9IOT|1|a|A|1257, 9IOT|1|a|A|1280, 9IOT|1|a|C|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_163 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.1734
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9IOT|1|a|G|1255
9IOT|1|a|A|1256
9IOT|1|a|A|1257
9IOT|1|a|G|1258
*
9IOT|1|a|C|1277
9IOT|1|a|G|1278
9IOT|1|a|G|1279
9IOT|1|a|A|1280
9IOT|1|a|C|1281
9IOT|1|a|C|1282
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14
- Chain z
- Ribonuclease I
Coloring options: