IL_9IOT_172
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_172 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.0682
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9IOT|1|a|A|1430
9IOT|1|a|A|1431
9IOT|1|a|G|1432
9IOT|1|a|A|1433
9IOT|1|a|A|1434
9IOT|1|a|G|1435
*
9IOT|1|a|C|1466
9IOT|1|a|C|1467
9IOT|1|a|A|1468
9IOT|1|a|C|1469
9IOT|1|a|U|1470
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L14
- Chain R
- Large ribosomal subunit protein bL19
- Chain t
- Small ribosomal subunit protein bS20
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