IL_9J1M_111
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_111 not in the Motif Atlas
- Geometric match to IL_9DFE_114
- Geometric discrepancy: 0.0879
- The information below is about IL_9DFE_114
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9J1M|1|B|C|70
9J1M|1|B|G|71
9J1M|1|B|A|72
9J1M|1|B|U|73
9J1M|1|B|G|74
9J1M|1|B|A|75
9J1M|1|B|U|76
9J1M|1|B|A|77
9J1M|1|B|C|78
*
9J1M|1|B|G|93
9J1M|1|B|A|94
9J1M|1|B|A|95
9J1M|1|B|A|96
9J1M|1|B|A|97
9J1M|1|B|G|98
9J1M|1|B|U|99
9J1M|1|B|A|100
9J1M|1|B|G|101
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- Large ribosomal subunit protein uL16
- Chain V
- Large ribosomal subunit protein bL25
Coloring options: