3D structure

PDB id
9J1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
KU13-bond Mycobacterium tuberculosis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CGU*AGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9J1M_155 not in the Motif Atlas
Geometric match to IL_5F5F_003
Geometric discrepancy: 0.242
The information below is about IL_5F5F_003
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

9J1M|1|a|C|1001
9J1M|1|a|G|1002
9J1M|1|a|U|1003
*
9J1M|1|a|A|1012
9J1M|1|a|G|1013
9J1M|1|a|G|1014

Current chains

Chain a
16S rRNA

Nearby chains

Chain n
Small ribosomal subunit protein uS14B

Coloring options:


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