IL_9J1M_166

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GCUG*CGAAUC

Length

10 nucleotides

Bulged bases

9J1M|1|a|U|1249, 9J1M|1|a|A|1272, 9J1M|1|a|U|1273

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_166 not in the Motif Atlas

Geometric match to IL_5J7L_055

Geometric discrepancy: 0.2338

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9J1M|1|a|G|1247
9J1M|1|a|C|1248
9J1M|1|a|U|1249
9J1M|1|a|G|1250
*
9J1M|1|a|C|1269
9J1M|1|a|G|1270
9J1M|1|a|A|1271
9J1M|1|a|A|1272
9J1M|1|a|U|1273
9J1M|1|a|C|1274

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14B