IL_9J1M_176
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_176 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.2243
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9J1M|1|a|C|1423
9J1M|1|a|C|1424
9J1M|1|a|G|1425
9J1M|1|a|A|1426
9J1M|1|a|A|1427
9J1M|1|a|G|1428
*
9J1M|1|a|C|1459
9J1M|1|a|G|1460
9J1M|1|a|A|1461
9J1M|1|a|A|1462
9J1M|1|a|G|1463
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- Large ribosomal subunit protein uL14
- Chain P
- Large ribosomal subunit protein bL19
- Chain t
- Small ribosomal subunit protein bS20
Coloring options: