IL_9J3R_005

3D structure

PDB id

9J3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA tetramer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

UGGAAU*AGGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J3R_005 not in the Motif Atlas

Geometric match to IL_3R9W_001

Geometric discrepancy: 0.2688

The information below is about IL_3R9W_001

Detailed Annotation

Quadruple sheared

Broad Annotation

Quadruple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9J3R|1|A|U|175
9J3R|1|A|G|176
9J3R|1|A|G|177
9J3R|1|A|A|178
9J3R|1|A|A|179
9J3R|1|A|U|180
*
9J3R|1|A|A|541
9J3R|1|A|G|542
9J3R|1|A|G|543
9J3R|1|A|A|544
9J3R|1|A|A|545
9J3R|1|A|G|546

Current chains

Chain A

RNA (580-MER)

Nearby chains